MRIQC: individual T1w report

Summary

Subject ID: 002_ControlPre.
Date and time: 2018-05-06, 22:44.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3079055244752297
cnr			4.211956746615294
efc			0.600190671340372
fber			82.5101089477539
fwhm	avg		3.9742433333333334
fwhm	x		3.76495
fwhm	y		4.20098
fwhm	z		3.9568
icvs	csf		0.21255575404803118
icvs	gm		0.4468553892889467
icvs	wm		0.3405888566630222
inu	med		1.0878535509109497
inu	range		0.3329602390527726
qi	1		0.0
qi	2		0.000773922181914409
rpve	csf		21.07737863096012
rpve	gm		10.916126168827558
rpve	wm		16.9321441847481
size	x		180
size	y		256
size	z		256
snr	csf		2.311606961901501
snr	gm		9.954209012365656
snr	total		10.255315555117683
snr	wm		18.500130691085893
snrd	csf		10.634591928066468
snrd	gm		24.15443136482654
snrd	total		24.21482001363199
snrd	wm		37.85543674800295
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.49787509574276
summary	bg	mad	17.306617736816406
summary	bg	mean	56.893802642822266
summary	bg	median	54.150733947753906
summary	bg	n	2839324.0
summary	bg	p05	31.81832427978516
summary	bg	p95	91.55409774780276
summary	bg	stdv	18.795127868652344
summary	csf	k	-0.30796533981518603
summary	csf	mad	141.1809844970703
summary	csf	mean	288.9930419921875
summary	csf	median	280.93206787109375
summary	csf	n	16895.0
summary	csf	p05	109.72936477661133
summary	csf	p95	487.6003814697266
summary	csf	stdv	121.52747344970703
summary	gm	k	0.2612708731751905
summary	gm	mad	61.48274612426758
summary	gm	mean	639.1170654296875
summary	gm	median	638.0831909179688
summary	gm	n	41433.0
summary	gm	p05	535.3977661132812
summary	gm	p95	746.6407104492188
summary	gm	stdv	64.10107421875
summary	wm	k	0.6919136207811367
summary	wm	mad	49.95964050292969
summary	wm	mean	1000.5260009765625
summary	wm	median	1000.0201416015625
summary	wm	n	213097.0
summary	wm	p05	912.1567626953125
summary	wm	p95	1089.0669921875
summary	wm	stdv	54.05463409423828
tpm	overlap	csf	0.21813024580478668
tpm	overlap	gm	0.5326378345489502
tpm	overlap	wm	0.5628867149353027
wm2max			0.6340922461881986

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	f5d928adfe84a2f65762d244a539b87c
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.