MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3079055244752297
cnr4.211956746615294
efc0.600190671340372
fber82.5101089477539
fwhmavg3.9742433333333334
fwhmx3.76495
fwhmy4.20098
fwhmz3.9568
icvscsf0.21255575404803118
icvsgm0.4468553892889467
icvswm0.3405888566630222
inumed1.0878535509109497
inurange0.3329602390527726
qi10.0
qi20.000773922181914409
rpvecsf21.07737863096012
rpvegm10.916126168827558
rpvewm16.9321441847481
sizex180
sizey256
sizez256
snrcsf2.311606961901501
snrgm9.954209012365656
snrtotal10.255315555117683
snrwm18.500130691085893
snrdcsf10.634591928066468
snrdgm24.15443136482654
snrdtotal24.21482001363199
snrdwm37.85543674800295
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.49787509574276
summarybgmad17.306617736816406
summarybgmean56.893802642822266
summarybgmedian54.150733947753906
summarybgn2839324.0
summarybgp0531.81832427978516
summarybgp9591.55409774780276
summarybgstdv18.795127868652344
summarycsfk-0.30796533981518603
summarycsfmad141.1809844970703
summarycsfmean288.9930419921875
summarycsfmedian280.93206787109375
summarycsfn16895.0
summarycsfp05109.72936477661133
summarycsfp95487.6003814697266
summarycsfstdv121.52747344970703
summarygmk0.2612708731751905
summarygmmad61.48274612426758
summarygmmean639.1170654296875
summarygmmedian638.0831909179688
summarygmn41433.0
summarygmp05535.3977661132812
summarygmp95746.6407104492188
summarygmstdv64.10107421875
summarywmk0.6919136207811367
summarywmmad49.95964050292969
summarywmmean1000.5260009765625
summarywmmedian1000.0201416015625
summarywmn213097.0
summarywmp05912.1567626953125
summarywmp951089.0669921875
summarywmstdv54.05463409423828
tpmoverlapcsf0.21813024580478668
tpmoverlapgm0.5326378345489502
tpmoverlapwm0.5628867149353027
wm2max0.6340922461881986

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumf5d928adfe84a2f65762d244a539b87c
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.